We are sharing the codes used in the lab.
AFNI (Analysis of Functional NeuroImages) : leading software suite of C, Python, R programs and shell scripts primarily developed for the analysis and display of multiple MRI modalities: anatomical, functional MRI (FMRI) and diffusion weighted (DW) data. It is freely available (both as open source code and as precompiled binaries) for research purposes.
PESTICA (Physiologic noise Esitmator using Temporal ICA) : A free research tool (not for clinical usage).
FreeSurfer is an open source package for the analysis and visualization of structural, functional, and diffusion neuroimaging data from cross-sectional and longitudinal studies. It is developed by the Laboratory for Computational Neuroimaging at the Athinoula A. Martinos Center for Biomedical Imaging.
